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Ligand · AB9

AB9 · (2R)-4-amino-N-{(1R,2S,3R,4R,5S)-5-amino-2-{2-[(2-aminoethyl)amino]ethoxy}-4-[(2,6-diamino-2,6-dideoxy-alpha-D-glucopyranosyl)oxy]-3-hydroxycyclohexyl}-2-hydroxybutanamide

AB9, (2R)-4-amino-N-{(1R,2S,3R,4R,5S)-5-amino-2-{2-[(2-aminoethyl)amino]ethoxy}-4-[(2,6-diamino-2,6-dideoxy-alpha-D-glucopyranosyl)oxy]-3-hydroxycyclohexyl}-2-hydroxybutanamide (C20 H43 N7 O8, 509.6 g/mol), in the MolNFT structures on…

Component
AB9
Formula
C20 H43 N7 O8
Class
ligand
Structures
4
PDB entries
2

Binding sites

AB9 in 4 structures; the first of them:

  • 2F4T · Asite RNA + designer antibiotic · AB9 B1 · binds G1403, C1404, G1405, U1406, C1407, A1408, C1409, G1491 and 7 more
  • 2F4V · 30S ribosome + designer antibiotic · AB9 A1637 · binds C1404, G1405, U1406, C1407, A1408, C1409, G1491, A1492 and 8 more
  • 2F4T · Asite RNA + designer antibiotic · AB9 B1 · binds G1403, C1404, G1405, U1406, C1407, A1408, C1409, G1491 and 7 more
  • 2F4V · 30S ribosome + designer antibiotic · AB9 A1637 · binds C1404, G1405, U1406, C1407, A1408, C1409, G1491, A1492 and 8 more

Residues it binds most

C 4, G 4, A 4, U 4 (residue and the binding sites it lines).

Found with

  • D2C · (2s,4s,4ar,5as,6s,11r,11as,12r,12ar)-7-chloro-4-(dimethylamino)-6,10,11,12-tetrahydroxy-1,3-dioxo-1,2,3,4,4A,5,5A,6,11,11A,12,12A-dodecahydrotetracene-2-carboxamide
  • K · Potassium ion
  • MG · Magnesium ion
  • ZN · Zinc ion

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