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Ligand · D1O

D1O · tri-(mi2-acetato-(O, O')-diaqua-dirhodium(II, II)

D1O, tri-(mi2-acetato-(O, O')-diaqua-dirhodium(II, II) (C6 H14 O8 Rh2, 420.0 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most…

Component
D1O
Formula
C6 H14 O8 Rh2
Class
ligand
Structures
5
PDB entries
4

Binding sites

D1O in 5 structures; the first of them:

  • 7QHR · Unexpected imidazole coordination to dirhodium tetraacetate complex in a protein… · D1O A201 · binds LYS7, PHE8, GLN11, HIS12, GLU111, VAL118, HIS119, PHE120
  • 8OQC · Dirhodium tetraacetate/ribonuclease A adduct in the P3221 space group (1 h soaking) · D1O A201 · binds LYS7, PHE8, GLN11, HIS12, GLU111, VAL118, HIS119
  • 8OQD · Dirhodium tetraacetate/ribonuclease A adduct in the P3221 space group (1 h soaking) · D1O A201 · binds LYS7, PHE8, GLN11, HIS12, GLU111, VAL118, HIS119, PHE120
  • 8OQE · Dirhodium tetraacetate/ribonuclease A adduct in the P3221 space group (6 h soaking) · D1O A202 · binds ALA4, LYS7, PHE8, GLN11, HIS12, GLU111, VAL118, HIS119 and 1 more
  • 7QHR · Unexpected imidazole coordination to dirhodium tetraacetate complex in a protein… · D1O A201 · binds LYS7, PHE8, GLN11, VAL118, HIS119

Residues it binds most

HIS 7, PHE 7, LYS 7, GLN 7, VAL 7, GLU 4, ALA 1 (residue and the binding sites it lines).

Found with

  • VVU · dirhodium (II) tetraacetate
  • CL · Chloride ion
  • FMT · Formic acid
  • CJI · cis-mi2-acetato-(O, O')-N-imidazyl-pentaaqua-dirhodium(II, II)
  • D3I · octaaqua-dirhodium (II, II) fragment
  • D5A · trans-mi2-acetato-(O, O')-N-imidazyl-pentaaqua-dirhodium(II, II)

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