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Ligand · CN3

CN3 · (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate

CN3, (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate (C36 H68 O17 P2, 834.9 g/mol), in the MolNFT structures on GenesisL1: bound…

Component
CN3
Formula
C36 H68 O17 P2
Class
ligand
Structures
3
PDB entries
3

Binding sites

CN3 in 3 structures; the first of them:

  • 6GIQ · Saccharomyces cerevisiae respiratory supercomplex III2IV · CN3 N408 · binds ASN27, TYR28, TRP29, MET32, LEU35, PHE88, LEU235, PHE236 and 6 more
  • 6YMX · CIII2/CIV respiratory supercomplex from saccharomyces cerevisiae · CN3 a605 · binds ASN406, LYS408, LEU409, PHE466, TYR470, LYS487, PHE94, LYS97 and 2 more
  • 6YMY · Cytochrome C oxidase from saccharomyces cerevisiae · CN3 a606 · binds ASN406, LYS408, LEU409, PHE466, TYR470, LYS487, PHE94, LYS97 and 1 more

Residues it binds most

LYS 4, PHE 4, TYR 4, LEU 4, ASN 4, ARG 2, HIS 2, ILE 2, MET 2, TRP 1 (residue and the binding sites it lines).

Found with

  • CUA · Dinuclear copper ion
  • HEA · Heme-A
  • PCF · 1,2-diacyl-sn-glycero-3-phoshocholine
  • CU · Copper (II) ion
  • 6PH · (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate
  • 7PH · (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate
  • 8PE · (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate
  • 9PE · (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate
  • CN5 · (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10, 12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate
  • FES · Fe2/s2 (inorganic) cluster
  • HEM · Protoporphyrin IX containing Fe
  • PTY · Phosphatidylethanolamine

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