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Ligand · CH

CH · N3-protonated cytidine-5'-monophosphate

CH, N3-protonated cytidine-5'-monophosphate (C9 H15 N3 O8 P +1, 324.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
CH
Formula
C9 H15 N3 O8 P +1
Class
ligand
Structures
4
PDB entries
2

Binding sites

CH in 4 structures; the first of them:

  • 2X61 · Crystal structure of the sialyltransferase CST-II in complex with trisaccharide acceptor… · CH A1264 · binds GLY8, ASN9, GLY10, PRO11, CYS30, ASN31, GLN32, THR131 and 11 more
  • 2X62 · Crystal structure of the sialyltransferase cst-II Y81F in complex with cmp · CH A1261 · binds GLY8, ASN9, GLY10, PRO11, CYS30, ASN31, GLN32, THR131 and 11 more
  • 2X61 · Crystal structure of the sialyltransferase cst-II in complex with trisaccharide acceptor… · CH A1264 · binds GLY8, ASN9, GLY10, PRO11, CYS30, ASN31, GLN32, THR131 and 11 more
  • 2X62 · Crystal structure of the sialyltransferase cst-II Y81F in complex with cmp · CH A1261 · binds GLY8, ASN9, GLY10, PRO11, CYS30, ASN31, GLN32, THR131 and 11 more

Residues it binds most

GLY 8, SER 8, ASN 8, TYR 8, ASP 8, GLN 8, CYS 8, ILE 8, PHE 8, PRO 8 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol
  • GAL · beta-D-galactopyranose
  • NGA · 2-acetamido-2-deoxy-beta-D-galactopyranose
  • SIA · N-acetyl-alpha-neuraminic acid
  • ACT · Acetate ion
  • MPD · (4S)-2-methyl-2,4-pentanediol

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