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Ligand · CGR

CGR · Cyclic guanosine diphosphate-ribose

CGR, Cyclic guanosine diphosphate-ribose (C15 H23 N5 O14 P2, 559.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
CGR
Formula
C15 H23 N5 O14 P2
Class
ligand
Structures
4
PDB entries
2

Binding sites

CGR in 4 structures; the first of them:

  • 2O3T · Structural Basis for Formation and Hydrolysis of Calcium Messenger Cyclic ADP-ribose by… · CGR A301 · binds LEU124, TRP125, SER126, ARG127, LYS129, LEU145, GLU146, ASP155 and 8 more
  • 3ZWN · Crystal structure of Aplysia cyclase complexed with substrate NGD and product cGDPR · CGR A2458 · binds PHE76, TRP77, SER78, GLY79, LEU97, GLU98, ASN107, TRP140 and 6 more
  • 2O3T · Structural basis for formation and hydrolysis of calcium messenger cyclic ADP-ribose by… · CGR A301 · binds LEU124, TRP125, SER126, ARG127, LYS129, LEU145, GLU146, ASP155 and 8 more
  • 3ZWN · Crystal structure of aplysia cyclase complexed with substrate ngd and product cgdpr · CGR A2458 · binds PHE76, TRP77, SER78, GLY79, LEU97, GLU98, ASN107, TRP140 and 6 more

Residues it binds most

SER 4, PHE 4, TRP 4, GLU 4, LEU 4, ARG 4, ASP 2, ASN 2, GLN 2, GLY 2 (residue and the binding sites it lines).

Found with

  • NGD · 3-(aminocarbonyl)-1-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihyd roxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxytetrahydrofuran-2- yl]pyridinium

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