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Ligand · CDF

CDF · 4-amino-1-{5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-alpha-D-arabinofuranosyl}pyrimidin-2(1H)-one

CDF, 4-amino-1-{5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-alpha-D-arabinofuranosyl}pyrimidin-2(1H)-one (C9 H15 N3 O11 P2, 403.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its…

Component
CDF
Formula
C9 H15 N3 O11 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

CDF in 2 structures; the first of them:

  • 2VSI · Synthesis of CDP-activated ribitol for teichoic acid precursors in Streptococcus… · CDF A1234 · binds LEU7, ALA8, GLY9, GLY10, GLN23, GLY52, GLY82, ALA83 and 9 more
  • 2VSI · Synthesis of cdp-activated ribitol for teichoic acid precursors in streptococcus… · CDF A1234 · binds LEU7, ALA8, GLY9, GLY10, GLN23, GLY52, GLY82, ALA83 and 9 more

Residues it binds most

GLY 4, ALA 4, ASP 4, SER 4, ARG 4, THR 4, GLN 4, LEU 4, LYS 4, VAL 4 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion

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