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Ligand · C9D

C9D · (2S,5R)-1-formyl-N'-[(3R)-pyrrolidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide

C9D, (2S,5R)-1-formyl-N'-[(3R)-pyrrolidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide (C12 H21 N5 O7 S, 379.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its…

Component
C9D
Formula
C12 H21 N5 O7 S
Class
ligand
Structures
2
PDB entries
2

Binding sites

C9D in 2 structures; the first of them:

  • 6B1X · Crystal structure KPC-2 beta-lactamase complexed with WCK 5153 by soaking · C9D A301 · binds CYS69, SER70, LYS73, TRP105, SER130, ASN132, GLU166, LEU167 and 8 more
  • 7KIS · Crystal structure of Pseudomonas aeruginosa PBP2 in complex with WCK 5153 · C9D A701 · binds GLY326, SER327, LYS330, ARG365, ASN366, TRP367, ARG369, SER384 and 10 more

Residues it binds most

SER 4, THR 4, GLY 4, ASN 4, LYS 4, ARG 4, CYS 2, TRP 4, GLN 2, ASP 2 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • CIT · Citric acid
  • EDO · 1,2-ethanediol

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