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Ligand · C8V

C8V · (2S,5R)-1-formyl-N'-[(3R)-piperidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide

C8V, (2S,5R)-1-formyl-N'-[(3R)-piperidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide (C13 H23 N5 O7 S, 393.4 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (4 PDB entries). Every binding site with its…

Component
C8V
Formula
C13 H23 N5 O7 S
Class
ligand
Structures
4
PDB entries
4

Binding sites

C8V in 4 structures; the first of them:

  • 6B1J · Crystal structure KPC-2 beta-lactamase complexed with WCK 5107 by soaking · C8V A301 · binds CYS69, SER70, LYS73, TRP105, SER130, ASN132, GLU166, LEU167 and 10 more
  • 6B1W · Crystal structure KPC-2 beta-lactamase complexed with WCK 5107 by co-crystallization · C8V A304 · binds CYS69, SER70, LYS73, TRP105, TYR129, SER130, ASN132, GLU166 and 7 more
  • 6T5Y · Crystal structure of AmpC from E.coli with Zidebactam (WCK 5107) · C8V A602 · binds GLY63, SER64, LYS67, LEU119, GLN120, ASP123, TYR150, ASN152 and 10 more
  • 7KIW · Crystal structure of Pseudomonas aeruginosa PBP3 in complex with zidebactam · C8V A601 · binds GLY293, SER294, LYS297, ARG331, VAL333, SER349, ASN351, TYR409 and 7 more

Residues it binds most

ASN 6, SER 6, GLY 6, THR 6, LYS 6, CYS 4, LEU 5, TYR 4, ARG 3, GLU 4 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • ZN · Zinc ion
  • SO4 · Sulfate ion
  • CIT · Citric acid
  • EDO · 1,2-ethanediol
  • PEG · Di(hydroxyethyl)ether

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