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Ligand · C6B

C6B · [(2S,3S,4R,5S)-5-(4-amino-2-oxo-pyrimidin-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate

C6B, [(2S,3S,4R,5S)-5-(4-amino-2-oxo-pyrimidin-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate (C9 H14 N3 O8 P, 323.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site…

Component
C6B
Formula
C9 H14 N3 O8 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

C6B in 2 structures; the first of them:

  • 3FBA · Crystal structure of 2C-methyl-D-erythritol 2,4-clycodiphosphate synthase complexed with… · C6B A901 · binds ALA100, GLN101, ALA102, PRO103, LYS104, MET105, LEU106, ALA131 and 2 more
  • 3FBA · Crystal structure of 2C-methyl-D-erythritol 2,4-clycodiphosphate synthase complexed with… · C6B A901 · binds ALA100, GLN101, ALA102, PRO103, LYS104, MET105, LEU106, ALA131 and 2 more

Residues it binds most

ALA 2, THR 2, GLN 2, LEU 2, LYS 2, MET 2, PRO 2 (residue and the binding sites it lines).

Found with

  • GPP · Geranyl diphosphate
  • ZN · Zinc ion
  • GOL · Glycerol

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