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Ligand · BP5

BP5 · 3-(2,2'-bipyridin-5-yl)-L-alanine

BP5, 3-(2,2'-bipyridin-5-yl)-L-alanine (C13 H13 N3 O2, 243.3 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
BP5
Formula
C13 H13 N3 O2
Class
ligand
Structures
5
PDB entries
4

Binding sites

BP5 in 5 structures; the first of them:

  • 2PXH · Crystal structure of a bipyridylalanyl-tRNA synthetase · BP5 A308 · binds GLY34, PHE35, GLU36, TYR65, ALA67, ALA70, PHE108, GLN109 and 8 more
  • 2PXH · Crystal structure of a bipyridylalanyl-tRNA synthetase · BP5 A308 · binds GLY34, PHE35, GLU36, TYR65, ALA67, ALA70, PHE108, GLN109 and 8 more
  • 4IWW · Computational design of an unnatural amino acid metalloprotein with atomic level accuracy · BP5 A133 · binds LEU83, PHE89, MET110, ASP111, PHE112, LEU131, LEU132, VAL134 and 5 more
  • 4IX0 · Computational design of an unnatural amino acid metalloprotein with atomic level accuracy · BP5 A133 · binds LEU83, PHE89, MET110, ASP111, PHE112, LEU131, LEU132, VAL134 and 5 more
  • 5EIL · Computational design of a high-affinity metalloprotein homotrimer containing a metal… · BP5 A9 · binds GLU5, MET6, LEU7, ILE8, ALA10, VAL11, LEU12, ILE13 and 3 more

Residues it binds most

LEU 6, GLU 8, ILE 8, PHE 5, MET 6, ALA 5, ASP 3, LYS 6, VAL 6, GLN 2 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • CO · Cobalt (II) ion
  • FE · Fe (III) ion
  • NI · Nickel (II) ion

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