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Ligand · BM3

BM3 · 2-acetamido-2-deoxy-alpha-D-mannopyranose

BM3, 2-acetamido-2-deoxy-alpha-D-mannopyranose (C8 H15 N O6, 221.2 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
BM3
Formula
C8 H15 N O6
Class
ligand
Structures
8
PDB entries
4

Binding sites

BM3 in 8 structures; the first of them:

  • 6JDA · Crystal structure of N-acetyl mannosmaine kinase in complex with N-acetylmannosamine in… · BM3 A301 · binds THR63, GLY64, ALA73, LEU74, ASN75, ASN78, LEU79, ASN103 and 8 more
  • 6JDC · Crystal structure of N-acetyl mannosmaine kinase in complex with ManNAc from Haemophilus… · BM3 A301 · binds THR63, GLY64, ILE65, ALA73, LEU74, ASN75, ASN78, LEU79 and 9 more
  • 6Q27 · N-acetylmannosamine kinase with N-acetylmannosamine from Staphylococcus aureus · BM3 A301 · binds ALA67, GLY68, VAL69, TYR79, ALA80, GLY81, THR83, ASN107 and 9 more
  • 6YUQ · Capsule O-acetyltransferase of Neisseria meningitidis serogroup A in complex with… · BM3 A407 · binds LYS146, THR147, ARG148, SER149
  • 6JDA · Crystal structure of N-acetyl mannosmaine kinase in complex with N- acetylmannosamine in… · BM3 A301 · binds THR63, GLY64, ALA73, LEU74, ASN75, ASN78, LEU79, ASN103 and 8 more
  • 6JDC · Crystal structure of N-acetyl mannosmaine kinase in complex with mannac from haemophilus… · BM3 A301 · binds THR63, GLY64, ALA73, LEU74, ASN75, ASN78, LEU79, ASN103 and 7 more
  • 6Q27 · N-acetylmannosamine kinase with N-acetylmannosamine from staphylococcus aureus · BM3 A301 · binds ALA67, GLY68, ALA80, GLY81, THR83, ASN107, ASP108, VAL109 and 7 more
  • 6YUQ · Capsule O-acetyltransferase of neisseria meningitidis serogroup a in complex with… · BM3 A407 · binds THR147, ARG148, SER149

Residues it binds most

GLY 12, ALA 12, ASN 12, GLU 12, THR 13, VAL 12, ASP 12, TYR 8, ILE 9, HIS 4 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • BMX · 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannopyranose
  • CL · Chloride ion
  • EDO · 1,2-ethanediol
  • GOL · Glycerol
  • PEG · Di(hydroxyethyl)ether
  • PGE · Triethylene glycol

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