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Ligand · BF2

BF2 · Beryllium difluoride

BF2, Beryllium difluoride (Be F2, 47.0 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
BF2
Formula
Be F2
Class
ligand
Structures
6
PDB entries
3

Binding sites

BF2 in 6 structures; the first of them:

  • 1L5Y · Crystal structure of MG2+ / BEF3-bound receiver domain of sinorhizobium meliloti dctd · BF2 A662 · binds GLU141
  • 1XHF · Crystal structure of the bef3-activated receiver domain of redox response regulator arca · BF2 B4001 · binds SER119, ARG120, ARG70, ASN74
  • 4UKD · UMP/CMP kinase from slime mold complexed with ADP, udp, beryllium fluoride · BF2 A501 · binds PRO15, GLY16, LYS19, LEU128, ARG131, ARG137, ARG148
  • 1L5Y · Crystal structure of MG2+ / BEF3-bound receiver domain of sinorhizobium meliloti dctd · BF2 A662 · binds GLU141
  • 1XHF · Crystal structure of the BEF3-activated receiver domain of redox response regulator arca · BF2 B4001 · binds SER119, ARG120, ARG70, ASN74
  • 4UKD · UMP/CMP kinase from slime mold complexed with ADP, udp, beryllium fluoride · BF2 A501 · binds PRO15, GLY16, LYS19, LEU128, ARG131, ARG137, ARG148

Residues it binds most

ARG 12, ILE 8, LYS 8, PRO 8, SER 6, ALA 6, ASP 4, GLY 4, ASN 2, GLN 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • BEF · Beryllium trifluoride ion
  • BF4 · Beryllium tetrafluoride ion
  • ADP · Adenosine-5'-diphosphate
  • UDP · Uridine-5'-diphosphate
  • SO4 · Sulfate ion
  • GOL · Glycerol

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