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Ligand · B8D

B8D · 4-O-methyl-alpha-D-glucopyranose

B8D, 4-O-methyl-alpha-D-glucopyranose (C7 H14 O6, 194.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
B8D
Formula
C7 H14 O6
Class
sugar
Structures
2
PDB entries
1

Binding sites

B8D in 2 structures; the first of them:

  • 3IJ7 · Directed 'in situ' Elongation as a Strategy to Characterize the Covalent Glycosyl-Enzyme… · B8D B3 · binds TRP59, GLN63, GLY104, THR163, LEU165
  • 3IJ7 · Directed 'in situ' elongation as a strategy to characterize the covalent glycosyl-enzyme… · B8D B3 · binds TRP59, GLN63, GLY104, THR163, LEU165

Residues it binds most

ARG 2, THR 4, GLN 4, TRP 4, ASP 2, GLY 2, LEU 2 (residue and the binding sites it lines).

Found with

  • GLF · alpha-D-glucopyranosyl fluoride
  • CA · Calcium ion
  • B9D · 5-fluoro-alpha-L-idopyranose
  • BGC · beta-D-glucopyranose
  • CL · Chloride ion

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