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Ligand · B7P

B7P · 2'-deoxy-5-fluorouridine 5'-(tetrahydrogen triphosphate)

B7P, 2'-deoxy-5-fluorouridine 5'-(tetrahydrogen triphosphate) (C9 H14 F N2 O14 P3, 486.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component
B7P
Formula
C9 H14 F N2 O14 P3
Class
ligand
Structures
2
PDB entries
2

Binding sites

B7P in 2 structures; the first of them:

  • 8GML · Crystal structure of human DNA polymerase eta incorporating 5F-dUTP across dG · B7P A501 · binds ASP13, MET14, ASP15, CYS16, PHE17, PHE18, ILE48, ALA49 and 10 more
  • 5WNY · DNA polymerase beta substrate complex with incoming 5-fdutp · B7P A409 · binds DA6, DC10, ARG149, GLY179, SER180, ARG183, SER188, GLY189 and 9 more

Residues it binds most

ASP 2, ARG 2, GLY 1, PHE 2, SER 1, DG 1, ILE 1, TYR 2, ALA 1, ASN 1 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • NA · Sodium ion
  • CL · Chloride ion

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