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Ligand · B3M

B3M · (3R)-3-amino-5-(methylsulfanyl)pentanoic acid

B3M, (3R)-3-amino-5-(methylsulfanyl)pentanoic acid (C6 H13 N O2 S, 163.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
B3M
Formula
C6 H13 N O2 S
Class
ligand
Structures
4
PDB entries
4

Binding sites

B3M in 4 structures; the first of them:

  • 6SPN · Structure of the Escherichia coli methionyl-tRNA synthetase complexed with beta-methionine · B3M A603 · binds ALA12, LEU13, PRO14, TYR15, ASP52, TRP253, ALA256, PRO257 and 3 more
  • 6SPR · Structure of the Escherichia coli methionyl-tRNA synthetase variant VI298 complexed with… · B3M A702 · binds ALA12, LEU13, PRO14, TYR15, ASP52, TRP253, ALA256, PRO257 and 3 more
  • 8BRV · Escherichia coli methionyl-tRNA synthetase mutant L13M,I297C complexed with… · B3M A604 · binds ALA12, MET13, PRO14, TYR15, ASP52, ALA256, PRO257, TYR260 and 2 more
  • 8BRX · Escherichia coli methionyl-tRNA synthetase mutant L13C,I297C complexed with… · B3M A604 · binds ALA12, CYS13, PRO14, TYR15, ASP52, ALA256, PRO257, TYR260 and 2 more

Residues it binds most

TYR 5, ALA 4, PRO 4, ASP 5, HIS 4, CYS 2, ILE 3, TRP 3, LEU 2, LYS 1 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • CIT · Citric acid
  • GOL · Glycerol

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