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Ligand · B0D

B0D · (2R,3S,4R,5R,6R)-2,6-difluoro-2-(hydroxymethyl)tetrahydro-2H-pyran-3,4,5-triol

B0D, (2R,3S,4R,5R,6R)-2,6-difluoro-2-(hydroxymethyl)tetrahydro-2H-pyran-3,4,5-triol (C6 H10 F2 O5, 200.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å…

Component
B0D
Formula
C6 H10 F2 O5
Class
sugar
Structures
4
PDB entries
2

Binding sites

B0D in 4 structures; the first of them:

  • 3IJ8 · Directed 'in situ' Elongation as a Strategy to Characterize the Covalent Glycosyl-Enzyme… · B0D A501 · binds TYR151, LEU162, ALA198, HIS201, GLU233, ILE235, ASP300, HIS305 and 1 more
  • 3IJ9 · Directed 'in situ' Elongation as a Strategy to Characterize the Covalent Glycosyl-Enzyme… · B0D A503 · binds LYS140, GLU171, ARG176, TRP203, GLY205, ASP206
  • 3IJ8 · Directed 'in situ' elongation as a strategy to characterize the covalent glycosyl-enzyme… · B0D A501 · binds TYR151, LEU162, ALA198, HIS201, GLU233, ILE235, ASP300, HIS305 and 1 more
  • 3IJ9 · Directed 'in situ' elongation as a strategy to characterize the covalent glycosyl-enzyme… · B0D A503 · binds LYS140, GLU171, ARG176, TRP203, GLY205, ASP206

Residues it binds most

GLY 10, ASP 10, LYS 8, GLU 6, ARG 4, ASN 4, HIS 2, PRO 4, TRP 4, ALA 2 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • B9D · 5-fluoro-alpha-L-idopyranose
  • CL · Chloride ion
  • BGC · beta-D-glucopyranose

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