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Ligand · AGU

AGU · Aminoguanidine

AGU, Aminoguanidine (C H6 N4, 74.1 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
AGU
Formula
C H6 N4
Class
ligand
Structures
5
PDB entries
3

Binding sites

AGU in 5 structures; the first of them:

  • 5NEQ · The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with aminoguanidine · AGU A101 · binds G7, A8, C9, G10
  • 5NY8 · The structure of the thermobifida fusca guanidine III riboswitch with aminoguanidine · AGU A101 · binds C6, G7, A8, C16, G17, U18, G34, A35 and 1 more
  • 8IZH · Crystal structure of trypsin-aminoguanidine complex at 2.30 Angstroms resolution · AGU A305 · binds THR125, SER127, CYS128
  • 5NEQ · The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with aminoguanidine · AGU A101 · binds G7, A8, C9, G10
  • 5NY8 · The structure of the thermobifida fusca guanidine III riboswitch with aminoguanidine · AGU A101 · binds C6, G7, A8, C16, G17, U18, A35

Residues it binds most

G 4, C 4, A 4, SER 3, CYS 2, ASP 2, GLY 1, THR 2, TRP 2, U 2 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion
  • SO4 · Sulfate ion
  • MG · Magnesium ion
  • CA · Calcium ion
  • CL · Chloride ion
  • GOL · Glycerol

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