Ligand · AG2
AG2 · Agmatine
AG2, Agmatine (C5 H14 N4, 130.2 g/mol), in the MolNFT structures on GenesisL1: bound in 12 records (9 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- AG2
- Formula
- C5 H14 N4
- Class
- ligand
- Structures
- 12
- PDB entries
- 9
Binding sites
AG2 in 12 structures; the first of them:
- 5NEX · The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with agmatine · AG2 A109 · binds G7, A8, C9, G10
- 6YE6 · E.coli's Putrescine receptor PotF complexed with Agmatine · AG2 A403 · binds TRP37, SER38, ASP39, TYR40, ASN65, SER85, GLU185, TRP244 and 4 more
- 7LOL · The structure of Agmatinase from E. Coli at 1.8 A displaying urea and agmatine · AG2 A401 · binds HIS151, TYR155, HIS163, THR244
- 9JFN · Arginine decarboxylase in Aspergillus oryzae complexed with agmatine · AG2 E601 · binds GLY137, LEU138, PHE141, ASN144, PHE325, LEU326, SER327, ALA328 and 9 more
- 5NEX · The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with agmatine · AG2 A109 · binds G7, A8, C9, G10
- 5O69 · The structure of the thermobifida fusca guanidine III riboswitch with agmatine. · AG2 A101 · binds C6, G7, A8, G9, C15, C16, G17, U18 and 1 more
- 6AGG · Crystal structure of agmatine-amppcp-mg complexed tias (TRNAILE2 agmatidine synthetase) · AG2 Z503 · binds GLU159, ASP193, ASN194, VAL203, CYS204, GLY215, ARG217, PRO398 and 2 more
- 6B2W · C. jejuni C315S agmatine deiminase with substrate bound · AG2 A401 · binds ASP77, TRP79, ASP82, TRP104, PHE108, ASP195, THR196, HIS199 and 3 more
- 6S3X · Crystal structure of the homospermidine synthase (hss) variant E210Q from blastochloris… · AG2 A502 · binds ARG146, ARG191, ASP304, PHE305, ASP424
- 6S49 · Crystal structure of the homospermidine synthase (hss) variant E210A from blastochloris… · AG2 A501 · binds ARG139, ARG146, ARG191, ASP304, PHE305, ASP424
- 6YE6 · E.COLI'S putrescine receptor potf complexed with agmatine · AG2 A403 · binds TRP37, SER38, ASP39, TYR40, ASN65, SER85, GLU185, TRP244 and 4 more
- 7LOL · The structure of agmatinase from E. COLI at 1.8 a displaying urea and agmatine · AG2 A401 · binds HIS151, TYR155, HIS163, THR244
Residues it binds most
ASP 15, PHE 14, SER 11, TRP 6, ARG 5, ASN 11, TYR 6, GLY 5, ALA 4, LEU 4 (residue and the binding sites it lines).
Found with
- SO4 · Sulfate ion
- JFN · (2R)-1-methoxypropan-2-amine
- NAD · Nicotinamide-adenine-dinucleotide
- ONT · (2~{S})-1-(2-methoxyethoxy)propan-2-amine
- ONW · (2~{R})-1-[(2~{R})-1-(2-methoxyethoxy)propan-2-yl]oxypropan-2-amine
- URE · Urea
- MG · Magnesium ion
- MN · Manganese (II) ion
- NA · Sodium ion
- CL · Chloride ion
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol
- ACP · Phosphomethylphosphonic acid adenylate ester
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.