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Ligand · AD7

AD7 · octyl 3-amino-3-deoxy-2-O-(2,6-dideoxy-alpha-L-lyxo-hexopyranosyl)-beta-D-galactopyranoside

AD7, octyl 3-amino-3-deoxy-2-O-(2,6-dideoxy-alpha-L-lyxo-hexopyranosyl)-beta-D-galactopyranoside (C20 H39 N O8, 421.5 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues…

Component
AD7
Formula
C20 H39 N O8
Class
ligand
Structures
4
PDB entries
2

Binding sites

AD7 in 4 structures; the first of them:

  • 2RJ4 · B-specific alpha-1,3-galactosyltransferase G176R +UDP+ADA · AD7 A356 · binds HIS233, PRO234, SER235, PHE236, THR245, TYR264, MET266, TRP300 and 6 more
  • 2RJ9 · B-specific alpha-1,3-galactosyltransferase (GTB) + UDP+ Amino-deoxy-acceptor · AD7 A356 · binds HIS233, PRO234, SER235, PHE236, THR245, TYR264, MET266, TRP300 and 5 more
  • 2RJ4 · B-specific alpha-1,3-galactosyltransferase \ G176R +UDP+ADA · AD7 A356 · binds HIS233, PRO234, SER235, PHE236, THR245, TYR264, MET266, TRP300 and 6 more
  • 2RJ9 · B-specific alpha-1,3-galactosyltransferase (gtb) + udp+ amino-deoxy- acceptor · AD7 A356 · binds HIS233, PRO234, SER235, PHE236, THR245, TYR264, MET266, TRP300 and 5 more

Residues it binds most

HIS 4, ALA 4, ASP 4, GLU 4, LEU 4, LYS 4, MET 4, PHE 4, PRO 4, SER 4 (residue and the binding sites it lines).

Found with

  • UDP · Uridine-5'-diphosphate
  • MN · Manganese (II) ion

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