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Ligand · AAR

AAR · Arginineamide

AAR, Arginineamide (C6 H16 N5 O +1, 174.2 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
AAR
Formula
C6 H16 N5 O +1
Class
ligand
Structures
8
PDB entries
4

Binding sites

AAR in 8 structures; the first of them:

  • 1DB6 · Solution structure of the DNA aptamer 5'-cgaccaacgtgtcgcctggtcg-3' complexed with… · AAR A23 · binds DA7, DC8, DG9, DT12, DC13, DG14, DC16, DT17 and 1 more
  • 1OLD · NMR structure of 24-mer deoxyribonucleic acid, 7 structures · AAR A25 · binds DA8, DC9, DG10, DG13, DC16, DC17, DT18, DT19
  • 2ARG · Formation of an amino acid binding pocket through adaptive zippering-up of a large DNA… · AAR A31 · binds DG9, DC10, DG15, DG16, DA18, DG19, DG20
  • 5VKB · Ethylene forming enzyme in complex with manganese, 2-oxoglutarate and argininamide · AAR A403 · binds GLU84, VAL85, THR86, ASP91, ARG171, ILE186, HIS189, ASP191 and 6 more
  • 1DB6 · Solution structure of the DNA aptamer 5'-cgaccaacgtgtcgcctggtcg-3' complexed with… · AAR A23 · binds DA7, DC8, DG9, DT12, DC13, DG14, DC16, DT17 and 1 more
  • 1OLD · NMR structure of 24-mer deoxyribonucleic acid, 7 structures · AAR A25 · binds DA8, DC9, DG10, DG13, DC16, DC17, DT18, DT19
  • 2ARG · Formation of an amino acid binding pocket through adaptive zippering- up of a large DNA… · AAR A31 · binds DG9, DC10, DG15, DG16, DA18, DG19, DG20
  • 5VKB · Ethylene forming enzyme in complex with manganese, 2-oxoglutarate and argininamide · AAR A403 · binds GLU84, VAL85, THR86, ASP91, ARG171, ILE186, HIS189, ASP191 and 6 more

Residues it binds most

DG 6, DC 6, DT 4, DA 6, ARG 2, ASP 2, PHE 2, ALA 2, CYS 2, GLU 2 (residue and the binding sites it lines).

Found with

  • AKG · 2-oxoglutaric acid
  • MN · Manganese (II) ion

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