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Ligand · A1IDZ

A1IDZ · [[(2~{R},3~{S},5~{R})-5-[2,4-bis(oxidanylidene)-5-selenophen-2-yl-pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate

A1IDZ, [[(2~{R},3~{S},5~{R})-5-[2,4-bis(oxidanylidene)-5-selenophen-2-yl-pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate (C13 H17 N2 O14 P3 Se, 597.2 g/mol), in the MolNFT structures on…

Component
A1IDZ
Formula
C13 H17 N2 O14 P3 Se
Class
ligand
Structures
1
PDB entries
1

Binding sites

A1IDZ in 1 structure; the first of them:

  • 9FM3 · KlenTaq DNA polymerase in a ternary complex with primer/template and a… · A1IDZ A901 · binds ARG573, ASP610, TYR611, SER612, GLN613, ILE614, GLU615, HIS639 and 9 more

Residues it binds most

ARG 1, ASP 1, TYR 1, DA 1, DG 1, GLN 1, GLU 1, HIS 1, ILE 1, LYS 1 (residue and the binding sites it lines).

Found with

  • DOC · 2',3'-dideoxycytidine-5'-monophosphate
  • MG · Magnesium ion

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