Ligand · A1AIV

A1AIV · 4-aminobutanenitrile

A1AIV, 4-aminobutanenitrile (C4 H8 N2, 84.1 g/mol), in the MolNFT structures on GenesisL1: bound in 29 records (29 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component: A1AIV
Formula: C4 H8 N2
Class: ligand
Structures: 29
PDB entries: 29

Binding sites

A1AIV in 29 structures; the first of them:

9B55 · Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 1 · A1AIV B101 · binds SER83, CYS85, LEU119, ARG74, GLY75, THR638, CYS639, PHE640
9B56 · Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 2 · A1AIV B101 · binds CYS85, ARG90, ASP117, LEU119, ARG74, GLY75, THR638, CYS639 and 1 more
9B57 · Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 3 · A1AIV B101 · binds CYS85, ARG90, LEU119, ARG74, GLY75, THR638, CYS639, PHE640
9B58 · Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 4 · A1AIV B101 · binds ILE84, CYS85, LEU86, ARG90, ASP117, GLY75, SER616, CYS639
9B59 · Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 5 · A1AIV B101 · binds SER83, ILE84, CYS85, GLY75, SER616, ASP617, HIS637, CYS639
9B5A · Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 6 · A1AIV B101 · binds ILE84, CYS85, ASP117, ARG74, GLY75, SER616, HIS637, CYS639
9B5B · Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 7 · A1AIV B101 · binds SER83, ILE84, CYS85, ASP117, GLY75, SER616, ASP617, HIS637 and 1 more
9B5C · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded)… · A1AIV D201 · binds PRO591, ILE592, CYS593, ASN77, ILE84, CYS85, LEU86, ARG90 and 2 more
9B5D · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded)… · A1AIV D101 · binds PRO591, ILE592, CYS593, ASN77, ILE84, CYS85, LEU86, ARG90 and 3 more
9B5E · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded)… · A1AIV D101 · binds PRO591, ILE592, CYS593, ASN77, CYS85, LEU86, ARG90, ASP117 and 1 more
9B5F · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded)… · A1AIV D201 · binds PRO591, ILE592, CYS593, ASN77, ILE84, CYS85, LEU86, ASP117 and 1 more
9B5G · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded)… · A1AIV D201 · binds PRO591, ILE592, CYS593, ASN77, CYS85, LEU86, ARG90, ASP117 and 1 more
9B5H · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded)… · A1AIV D201 · binds PRO591, ILE592, CYS593, ASN77, ILE84, CYS85, LEU86, ARG90 and 2 more
9B5I · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded)… · A1AIV D201 · binds PRO591, ILE592, CYS593, ASN77, ILE84, CYS85, LEU86, ARG90 and 2 more
9B5J · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded)… · A1AIV D201 · binds PRO591, ILE592, CYS593, CYS85, LEU86, ARG90, ASP117, GLY75
9B5K · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded)… · A1AIV D101 · binds PRO591, ILE592, CYS593, ILE84, CYS85, LEU86, ASP117, ARG74 and 1 more
9B5L · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded)… · A1AIV D101 · binds PRO591, ILE592, CYS593, ASN77, ILE84, CYS85, LEU86, ARG90 and 2 more
9B5M · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded)… · A1AIV D201 · binds PRO591, ILE592, CYS593, ASN77, CYS85, LEU86, ARG90, ASP117 and 1 more
9B5N · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded)… · A1AIV D101 · binds PRO591, ILE592, CYS593, ILE84, CYS85, LEU86, ARG90, ASP117 and 2 more
9B5O · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded)… · A1AIV D101 · binds PRO591, ILE592, CYS593, ASN77, ILE84, CYS85, LEU86, ARG90 and 2 more
9B5P · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded)… · A1AIV D201 · binds PRO591, ILE592, CYS593, ILE84, CYS85, LEU86, ASP117, GLY75
9B5Q · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded)… · A1AIV D201 · binds PRO591, ILE592, CYS593, ILE84, CYS85, LEU86, ARG90, ASP117 and 1 more
9B5R · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded)… · A1AIV D201 · binds PRO591, ILE592, CYS593, ILE84, CYS85, LEU86, ARG90, ASP117 and 1 more
9B5S · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded)… · A1AIV D201 · binds PRO591, ILE592, CYS593, ASN77, CYS85, LEU86, ARG90, ASP117 and 1 more
9B5T · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded)… · A1AIV D201 · binds PRO591, ILE592, CYS593, ASN77, CYS85, LEU86, ARG90, ASP117 and 1 more
9B5U · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded)… · A1AIV D101 · binds PRO591, ILE592, CYS593, ILE84, CYS85, LEU86, ASP117, ARG74 and 1 more
9B5V · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded)… · A1AIV D101 · binds PRO591, ILE592, CYS593, ILE84, CYS85, LEU86, ASP117, GLY75
9B5W · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded)… · A1AIV D101 · binds PRO591, ILE592, CYS593, ILE84, CYS85, LEU86, ARG90, ASP117 and 2 more
9B5X · Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded)… · A1AIV D101 · binds PRO591, ILE592, CYS593, ILE84, CYS85, LEU86, ASP87, ARG90 and 2 more

Residues it binds most

CYS 29, ILE 26, ARG 24, ASP 27, GLY 29, LEU 26, PRO 22, ASN 12, SER 5, HIS 3 (residue and the binding sites it lines).

Found with

MG · Magnesium ion
ATP · Adenosine-5'-triphosphate
AMP · Adenosine monophosphate
POP · Pyrophosphate 2-

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