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Ligand · A1AE1

A1AE1 · 1-cyclopropyl-7-(4-{4-[({[(3aR,4R,7R,8S,9S,10R,11R,13R,14E,15S,15aR)-10-{[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-4-ethyl-11-methoxy-14-(methoxyimino)-3a,7,9,11,13,15-hexamethyl-2,6-dioxododecahydro-2H,4H-[1,3]dioxolo[4,5-c]oxacyclotetradecin-8-yl]oxy}carbonyl)amino]butyl}piperazin-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic acid (non-preferred name)

A1AE1, 1-cyclopropyl-7-(4-{4-[({[(3aR,4R,7R,8S,9S,10R,11R,13R,14E,15S,15aR)-10-{[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-4-ethyl-11-methoxy-14-(methoxyimino)-3a,7,9,11,13,15-hexamethyl-2,6-dioxododecahydro-2H,4H-[1…

Component
A1AE1
Formula
C54 H81 F N6 O15
Class
ligand
Structures
2
PDB entries
2

Binding sites

A1AE1 in 2 structures; the first of them:

  • 8VTW · Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with… · A1AE1 1A3996 · binds A746, C1782, A2057, A2058, A2059, A2062, 2MA2503, G2505 and 6 more
  • 8VTX · Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in… · A1AE1 1A4094 · binds A746, C1782, A2057, MA62058, A2059, A2062, 2MA2503, G2505 and 7 more

Residues it binds most

A 4, U 4, C 4, 2MA 4, ARG 4, G 4, MA6 2 (residue and the binding sites it lines).

Found with

  • SF4 · Iron/sulfur cluster
  • MG · Magnesium ion
  • ZN · Zinc ion
  • ARG · Arginine
  • FME · N-formylmethionine
  • PHE · Phenylalanine
  • K · Potassium ion
  • MPD · (4S)-2-methyl-2,4-pentanediol

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