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Ligand · 9SD

9SD · (2~{R},3~{R},4~{R},5~{R})-3-acetamido-2-[(1~{R})-1,3-bis(oxidanyl)propyl]-5-fluoranyl-4-oxidanyl-2,3,4,5-tetrahydropyran-1-ium-6-carboxylic acid

9SD, (2~{R},3~{R},4~{R},5~{R})-3-acetamido-2-[(1~{R})-1,3-bis(oxidanyl)propyl]-5-fluoranyl-4-oxidanyl-2,3,4,5-tetrahydropyran-1-ium-6-carboxylic acid (C11 H17 F N O7 +1, 294.3 g/mol), in the MolNFT structures on GenesisL1: bound in 1…

Component
9SD
Formula
C11 H17 F N O7 +1
Class
ligand
Structures
1
PDB entries
1

Binding sites

9SD in 1 structure; the first of them:

  • 5W2W · Influenza virus neuraminidase N9 in complex with 8-deoxygenated 2,3… · 9SD A516 · binds ARG118, GLU119, ASP151, ARG152, TRP179, ILE223, ARG225, ALA247 and 5 more

Residues it binds most

ARG 1, GLU 1, ALA 1, ASP 1, ILE 1, TRP 1, TYR 1 (residue and the binding sites it lines).

Found with

  • 9S7 · 5-acetamido-2,6-anhydro-3,5,8-trideoxy-3-fluoro-D-threo-L-galacto-nononic acid
  • 9SP · (2R,3R,4R,5R,6R)-5-acetamido-6-[(1R)-1,3-bis(oxidanyl) propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxane-2-carboxylic acid
  • CA · Calcium ion
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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