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Ligand · 9DJ

9DJ · 3-[({(1R)-6-[methyl(phenyl)amino]-1,2,3,4-tetrahydronaphthalen-1-yl}methyl)amino]pyridine-4-carboxylic acid

9DJ, 3-[({(1R)-6-[methyl(phenyl)amino]-1,2,3,4-tetrahydronaphthalen-1-yl}methyl)amino]pyridine-4-carboxylic acid (C24 H25 N3 O2, 387.5 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site…

Component
9DJ
Formula
C24 H25 N3 O2
Class
ligand
Structures
4
PDB entries
2

Binding sites

9DJ in 4 structures; the first of them:

  • 5VGI · Crystal Structure of KDM4 with the Small Molecule Inhibitor QC6352 · 9DJ A503 · binds ILE71, GLN73, GLN84, ASN86, TYR132, ALA134, ASP135, TYR177 and 12 more
  • 7JM5 · Crystal structure of KDM4B in complex with QC6352 · 9DJ A402 · binds ILE72, GLN74, GLN85, ASN87, TYR133, ALA135, ASP136, TYR178 and 11 more
  • 5VGI · Crystal structure of KDM4 with the small molecule inhibitor QC6352 · 9DJ A503 · binds GLN73, GLN84, ASN86, TYR132, TYR177, SER184, PHE185, HIS188 and 7 more
  • 7JM5 · Crystal structure of KDM4B in complex with QC6352 · 9DJ A402 · binds ILE72, GLN85, ASN87, TYR133, TYR178, THR185, PHE186, HIS189 and 7 more

Residues it binds most

HIS 12, ASN 12, LYS 12, TYR 12, GLN 12, ARG 11, PHE 12, TRP 12, ILE 10, ASP 8 (residue and the binding sites it lines).

Found with

  • NI · Nickel (II) ion
  • ZN · Zinc ion

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