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Ligand · 8OD

8OD · [(2R,3S,4R,5R)-5-(6-azanyl-8-oxo-7H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate

8OD, [(2R,3S,4R,5R)-5-(6-azanyl-8-oxo-7H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate (C10 H15 N5 O11 P2, 443.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding…

Component
8OD
Formula
C10 H15 N5 O11 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

8OD in 2 structures; the first of them:

  • 3NBF · Q28E mutant of hera helicase N-terminal domain bound to 8-oxo-ADP · 8OD A500 · binds PHE3, LEU21, THR23, PRO24, THR25, GLU28, GLY48, THR49 and 7 more
  • 3NBF · Q28E mutant of hera helicase N-terminal domain bound to 8-oxo-ADP · 8OD A500 · binds PHE3, LEU21, THR23, PRO24, THR25, GLU28, GLY48, THR49 and 7 more

Residues it binds most

THR 12, GLY 12, ARG 12, PRO 12, GLU 12, PHE 12, LEU 4, MET 8, TYR 8, GLN 4 (residue and the binding sites it lines).

Found with

  • 8OP · [(2R,3S,4R,5R)-5-(6-azanyl-8-oxo-7H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

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