GL1X · GenesisL1 explorer

Ligand · 8IJ

8IJ · (2R)-3-{[(R)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctadecanoate

8IJ, (2R)-3-{[(R)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctadecanoate (C45 H87 O13 P, 867.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries).…

Component
8IJ
Formula
C45 H87 O13 P
Class
ligand
Structures
2
PDB entries
2

Binding sites

8IJ in 2 structures; the first of them:

  • 8GF8 · Cryo-EM structure of human TRPV1 in cNW11 nanodisc and soybean lipids · 8IJ A1202 · binds ARG410, HIS411, ASP509, SER510, TYR511, SER512, MET514, LEU515 and 22 more
  • 8T0E · TRPV1 in Nanodisc not bound with lysophosphatidic acid (apo) · 8IJ A901 · binds ARG409, HIS410, ASP509, SER510, TYR511, SER512, LEU515, PHE543 and 14 more

Residues it binds most

LEU 8, ILE 8, PHE 8, ARG 8, SER 8, ALA 8, TYR 8, ASN 8, ASP 8, GLN 8 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion
  • POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate

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