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Ligand · 8EX

8EX · 2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactopyranose

8EX, 2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactopyranose (C8 H15 N O12 S2, 381.3 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component
8EX
Formula
C8 H15 N O12 S2
Class
ligand
Structures
3
PDB entries
2

Binding sites

8EX in 3 structures; the first of them:

  • 5XS8 · Crystal structure of solute-binding protein complexed with unsaturated chondroitin… · 8EX E1 · binds HIS36, LEU37, ASN144, TYR146, GLN155, ARG204, ALA205, ASN206 and 8 more
  • 7YKE · Crystal structure of chondroitin ABC lyase I in complex with chondroitin disaccharide… · 8EX B1 · binds ASP490, ARG500, HIS501, GLU502, TYR655, THR713
  • 5XS8 · Crystal structure of solute-binding protein complexed with unsaturated chondroitin… · 8EX E1 · binds HIS36, LEU37, TYR146, ARG204, LYS210, TRP284, LEU326, LEU389 and 1 more

Residues it binds most

LEU 8, ARG 10, TYR 10, HIS 10, ASN 5, GLN 5, LYS 8, TRP 8, ALA 5, ASP 3 (residue and the binding sites it lines).

Found with

  • GCD · 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid
  • CA · Calcium ion
  • MG · Magnesium ion

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