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Ligand · 7R9

7R9 · 5-Chloro-thiophene-2-carboxylic acid [(S)-2-[2-difluoromethoxy-3-(2-oxo-piperidin-1-yl)-benzenesulfonylamino]-3-((S)-3-dimethylamino-pyrrolidin-1-yl)-3-oxo-propyl]-amide

7R9, 5-Chloro-thiophene-2-carboxylic acid [(S)-2-[2-difluoromethoxy-3-(2-oxo-piperidin-1-yl)-benzenesulfonylamino]-3-((S)-3-dimethylamino-pyrrolidin-1-yl)-3-oxo-propyl]-amide (C26 H32 Cl F2 N5 O6 S2, 648.1 g/mol), in the MolNFT structures…

Component
7R9
Formula
C26 H32 Cl F2 N5 O6 S2
Class
ligand
Structures
4
PDB entries
2

Binding sites

7R9 in 4 structures; the first of them:

  • 4BTI · factor Xa in complex with the dual thrombin-FXa inhibitor 58. · 7R9 B1246 · binds HIS57, GLN61, LYS96, GLU97, THR98, TYR99, PHE174, ASP189 and 14 more
  • 4LXB · Crystal Structure Analysis of thrombin in complex with compound D58 · 7R9 H304 · binds HIS57, TYR60A, TRP60D, GLU97A, ASN98, LEU99, ILE174, ASP189 and 14 more
  • 4BTI · Factor xa in complex with the dual thrombin-fxa inhibitor 58. · 7R9 B1246 · binds HIS57, GLN61, LYS96, GLU97, THR98, TYR99, PHE174, ASP189 and 14 more
  • 4LXB · Crystal structure analysis of thrombin in complex with compound D58 · 7R9 H304 · binds HIS57, TYR60A, TRP60D, GLU97A, ASN98, LEU99, ILE174, ASP189 and 14 more

Residues it binds most

GLY 6, GLU 6, CYS 6, SER 6, TYR 6, GLN 4, TRP 6, ALA 6, ASP 6, HIS 6 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • NA · Sodium ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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