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Ligand · 6Y2

6Y2 · ~{N}-[(2~{S},3~{R},4~{R},5~{R},6~{R})-2-[(2~{R},3~{S}, 4~{R},5~{R},6~{S})-5-acetamido-2-(hydroxymethyl)-6-(4-nitrophenoxy)-4-oxidanyl-oxan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide

6Y2, ~{N}-[(2~{S},3~{R},4~{R},5~{R},6~{R})-2-[(2~{R},3~{S}, 4~{R},5~{R},6~{S})-5-acetamido-2-(hydroxymethyl)-6-(4-nitrophenoxy)-4-oxidanyl-oxan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide (C22 H31 N3 O13, 545.5 g/mol)…

Component
6Y2
Formula
C22 H31 N3 O13
Class
ligand
Structures
6
PDB entries
3

Binding sites

6Y2 in 6 structures; the first of them:

  • 5KXC · Wisteria floribunda lectin in complex with GalNAc(beta1-4)GlcNAc (LacdiNAc) at pH 8.5. · 6Y2 A303 · binds ASP117, GLY134, GLY135, PHE159, ASN161, GLY244, LEU245, SER246 and 1 more
  • 5KXD · Wisteria floribunda lectin in complex with GalNAc(beta1-4)GlcNAc (LacdiNAc) at pH 6.5 · 6Y2 A306 · binds ASP117, GLY134, GLY135, PHE159, ASN161, GLY244, LEU245, SER246 and 1 more
  • 5KXE · Wisteria floribunda lectin in complex with GalNAc(beta1-4)GlcNAc (LacdiNAc) at pH 4.2 · 6Y2 A306 · binds ASP117, GLY134, GLY135, PHE159, ASN161, GLY244, LEU245, SER246 and 1 more
  • 5KXC · Wisteria floribunda lectin in complex with GALNAC(BETA1-4)GLCNAC (lacdinac) at pH 8.5. · 6Y2 A303 · binds ASP117, GLY134, GLY135, PHE159, ASN161, GLY244, LEU245, SER246 and 1 more
  • 5KXD · Wisteria floribunda lectin in complex with GALNAC(BETA1-4)GLCNAC (lacdinac) at pH 6.5 · 6Y2 A306 · binds ASP117, GLY134, GLY135, PHE159, ASN161, GLY244, LEU245, SER246 and 1 more
  • 5KXE · Wisteria floribunda lectin in complex with GALNAC(BETA1-4)GLCNAC (lacdinac) at pH 4.2 · 6Y2 A306 · binds ASP117, GLY134, GLY135, PHE159, ASN161, GLY244, LEU245, SER246 and 1 more

Residues it binds most

GLY 24, ASN 24, ASP 24, HIS 24, LEU 24, PHE 24, SER 24, TRP 6, PRO 2 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • MN · Manganese (II) ion
  • BMA · beta-D-mannopyranose
  • FUC · alpha-L-fucopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • MAN · alpha-D-mannopyranose
  • XYP · beta-D-xylopyranose
  • PO4 · Phosphate ion
  • SO4 · Sulfate ion
  • ACT · Acetate ion

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