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Ligand · 6PY

6PY · 5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-[(2-methoxyethyl)carbamoyl]-D-glycero-D-galacto-non-2-enon ic acid

6PY, 5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-[(2-methoxyethyl)carbamoyl]-D-glycero-D-galacto-non-2-enon ic acid (C16 H27 N5 O9, 433.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry).…

Component
6PY
Formula
C16 H27 N5 O9
Class
ligand
Structures
2
PDB entries
1

Binding sites

6PY in 2 structures; the first of them:

  • 5JYY · Structure-based Tetravalent Zanamivir with Potent Inhibitory Activity against… · 6PY A513 · binds ARG37, GLU38, LEU53, ASP70, ARG71, ARG75, TRP98, SER99 and 10 more
  • 5JYY · Structure-based tetravalent zanamivir with potent inhibitory activity against… · 6PY A513 · binds ARG37, GLU38, LEU53, ASP70, ARG71, ARG75, TRP98, SER99 and 10 more

Residues it binds most

ARG 2, GLU 2, ALA 2, ASN 2, ASP 2, ILE 2, LEU 2, LYS 2, SER 2, TRP 2 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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