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Ligand · 6PJ

6PJ · Cy5.5-PEG2

6PJ, Cy5.5-PEG2 (C50 H65 N3 O16 S4, 1092.3 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
6PJ
Formula
C50 H65 N3 O16 S4
Class
ligand
Structures
3
PDB entries
2

Binding sites

6PJ in 3 structures; the first of them:

  • 5L7F · Crystal structure of MMP12 mutant K421A in complex with RXP470.1 conjugated with… · 6PJ A310 · binds PRO232, LYS233, ALA241, VAL243, THR247, PHE248, ARG249, SER251 and 1 more
  • 5L79 · Crystal structure of MMP12 in complex with RXP470.1 conjugated with fluorophore CY5,5 in… · 6PJ A307 · binds LYS233, TYR240, LYS241, THR247, ARG249, LEU250, SER251, ALA252
  • 5L7F · Crystal structure of MMP12 mutant K421A in complex with RXP470.1 conjugated with… · 6PJ A310 · binds PRO232, LYS233, ALA241, VAL243, THR247, PHE248, ARG249, SER251 and 1 more

Residues it binds most

ALA 5, LYS 5, ARG 5, SER 5, THR 5, PRO 4, VAL 4, TYR 3, PHE 2, LEU 1 (residue and the binding sites it lines).

Found with

  • R47 · N-[(2S)-3-[(S)-(4-bromophenyl)(hydroxy)phosphoryl]-2-{[3-(3'-chlorobiphenyl-4-yl)-1,2-oxazol-5-yl]methyl}propanoyl]-L-alpha-glutamyl-L-alpha-glutamine
  • CA · Calcium ion
  • ZN · Zinc ion
  • EDO · 1,2-ethanediol
  • GOL · Glycerol
  • BR · Bromide ion
  • DMS · Dimethyl sulfoxide

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