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Ligand · 6O8

6O8 · (4R,7S)-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-7-[(pentanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphatetradecan-1-aminium

6O8, (4R,7S)-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-7-[(pentanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphatetradecan-1-aminium (C19 H39 N O8 P +1, 440.5 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries).…

Component
6O8
Formula
C19 H39 N O8 P +1
Class
ligand
Structures
2
PDB entries
2

Binding sites

6O8 in 2 structures; the first of them:

  • 5IRX · Structure of TRPV1 in complex with DkTx and RTX, determined in lipid nanodisc · 6O8 A801 · binds ASN437, VAL440, TYR441, TYR444, GLY484, TYR487, PHE488, ARG491 and 5 more
  • 5IRZ · Structure of TRPV1 determined in lipid nanodisc · 6O8 D801 · binds ASN437, VAL440, TYR441, TYR444, SER483, GLY484, TYR487, PHE488 and 5 more

Residues it binds most

TYR 8, PHE 8, ARG 8, ASN 8, GLU 8, GLY 8, VAL 8, SER 7 (residue and the binding sites it lines).

Found with

  • 6OE · (2S)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate
  • 6ES · (2S)-1-{[(R)-hydroxy{[(1R,2R,3S,4S,5S,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}-3-(pentanoyloxy)propan-2-yl decanoate
  • 6EU · resiniferatoxin
  • 6O9 · (2S)-2-(acetyloxy)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}propyl pentanoate

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