GL1X · GenesisL1 explorer

Ligand · 6GS

6GS · 2'-deoxy-2'-fluoro-2'-methyluridine 5'-(trihydrogen diphosphate)

6GS, 2'-deoxy-2'-fluoro-2'-methyluridine 5'-(trihydrogen diphosphate) (C10 H15 F N2 O11 P2, 420.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the…

Component
6GS
Formula
C10 H15 F N2 O11 P2
Class
ligand
Structures
3
PDB entries
2

Binding sites

6GS in 3 structures; the first of them:

  • 4WTG · Crystal structure of HCV NS5B genotype 2A jfh-1 isolate with S15G E86Q E87Q C223H V321I… · 6GS P602 · binds A2, A3, U6, ARG48, LYS141, ARG158, ASP220, THR221 and 9 more
  • 8GWM · SARS-CoV-2 E-RTC bound with MMP-nsp9 and GMPPNP · 6GS G201 · binds PHE35, ASP36, ILE37, ASN39, LYS41, VAL42, PHE48, LEU49 and 6 more
  • 4WTG · Crystal structure of HCV NS5B genotype 2A jfh-1 isolate with S15G E86Q E87Q C223H V321I… · 6GS P602 · binds A2, A3, U6, ARG48, LYS141, ARG158, ASP220, THR221 and 9 more

Residues it binds most

ASP 3, ARG 2, ASN 3, A 2, LYS 3, PHE 3, THR 2, HIS 2, SER 2, U 2 (residue and the binding sites it lines).

Found with

  • MN · Manganese (II) ion
  • CL · Chloride ion
  • GNP · Phosphoaminophosphonic acid-guanylate ester
  • ZN · Zinc ion

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