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Ligand · 5X8

5X8 · S-adenosyl-L-cysteine

5X8, S-adenosyl-L-cysteine (C13 H18 N6 O5 S, 370.4 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
5X8
Formula
C13 H18 N6 O5 S
Class
ligand
Structures
8
PDB entries
4

Binding sites

5X8 in 8 structures; the first of them:

  • 5FEW · HydE from T. maritima in complex with S-adenosyl-L-cysteine (final product) · 5X8 A410 · binds TYR69, CYS70, GLN107, ARG159, GLU161, MET199, PRO229, PHE230 and 6 more
  • 5FF0 · HydE from T. maritima in complex with S-adenosyl-L-cysteine and methionine · 5X8 A409 · binds TYR69, CYS70, GLN107, ARG159, GLU161, MET199, PRO229, PHE230 and 6 more
  • 7O1T · Fe(CO)2CNCl species bound [HydE from T. Maritima · 5X8 A407 · binds TYR69, CYS70, GLN107, SER108, GLY109, GLU110, SER136, LEU137 and 12 more
  • 7O25 · Complex-B bound [FeFe]-hydrogenase maturase HydE from T. maritima (reaction triggered in… · 5X8 A412 · binds TYR69, CYS70, GLN107, ARG159, GLU161, MET199, PRO229, PHE230 and 9 more
  • 5FEW · Hyde from T. maritima in complex with S-adenosyl-L-cysteine (final product) · 5X8 A410 · binds TYR69, CYS70, GLN107, ARG159, GLU161, MET199, PRO229, PHE230 and 6 more
  • 5FF0 · Hyde from T. maritima in complex with S-adenosyl-L-cysteine and methionine · 5X8 A409 · binds TYR69, CYS70, GLN107, ARG159, GLU161, MET199, PRO229, PHE230 and 6 more
  • 7O1T · FE(CO)2CNCL species bound [hyde from T. maritima · 5X8 A407 · binds TYR69, CYS70, GLN107, SER108, GLY109, GLU110, SER136, LEU137 and 12 more
  • 7O25 · Complex-B bound [fefe]-hydrogenase maturase hyde from T. maritima (reaction triggered in… · 5X8 A412 · binds TYR69, CYS70, GLN107, ARG159, GLU161, MET199, PRO229, PHE230 and 9 more

Residues it binds most

TYR 8, LEU 8, THR 6, ARG 8, GLU 8, MET 8, CYS 8, GLN 8, ILE 8, PHE 8 (residue and the binding sites it lines).

Found with

  • CPS · 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate
  • CL · Chloride ion
  • SF4 · Iron/sulfur cluster
  • MET · Methionine
  • PYR · Pyruvic acid
  • FE2 · Fe (II) ion
  • CMO · Carbon monoxide
  • CYN · Cyanide ion
  • CYS · Cysteine
  • 41K · (2R,4R)-2-methyl-1,3-thiazolidine-2,4-dicarboxylic acid
  • SAH · S-adenosyl-L-homocysteine
  • SFS · Fe4-Se4 cluster

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