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Ligand · 5VI

5VI · (2S)-2-azanyl-3-[[(2S)-3-butanoyloxy-2-dec-9-enoyloxy-propoxy]-oxidanyl-phosphoryl]oxy-propanoic acid

5VI, (2S)-2-azanyl-3-[[(2S)-3-butanoyloxy-2-dec-9-enoyloxy-propoxy]-oxidanyl-phosphoryl]oxy-propanoic acid (C20 H36 N O10 P, 481.5 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its…

Component
5VI
Formula
C20 H36 N O10 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

5VI in 2 structures; the first of them:

  • 7V6Y · Cryo-EM structure of Patched in lipid nanodisc - the wildtype, 3.5 angstrom (re-processed… · 5VI A1203 · binds VAL111, GLU112, PRO141, LEU143, MET349, PHE408, LEU413, LEU763 and 7 more
  • 7V6Y · Cryo-EM structure of patched in lipid nanodisc - the wildtype, 3.5 ångström (re-processed… · 5VI A1203 · binds VAL111, GLU112, MET349, PHE408, LEU413, LEU763, GLN780, PHE781 and 5 more

Residues it binds most

PHE 2, LEU 2, TYR 2, GLN 2, GLU 2, MET 2, TRP 2, VAL 2, PRO 1 (residue and the binding sites it lines).

Found with

  • CLR · Cholesterol
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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