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Ligand · 5R6

5R6 · Nogalamycin RO

5R6, Nogalamycin RO (C35 H41 N O14, 699.7 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
5R6
Formula
C35 H41 N O14
Class
ligand
Structures
2
PDB entries
2

Binding sites

5R6 in 2 structures; the first of them:

  • 5EQU · Crystal structure of the epimerase SnoN in complex with Fe3+, alpha ketoglutarate and… · 5R6 A302 · binds TRP64, GLY65, SER66, MET72, TYR74, LYS110, GLU112, LEU114 and 6 more
  • 5ERL · Crystal structure of the epimerase SnoN in complex with Ni2+, succinate and nogalamycin RO · 5R6 A302 · binds TRP64, GLY65, SER66, MET72, TYR74, LYS110, GLU112, ALA128 and 5 more

Residues it binds most

TRP 8, LEU 8, ASP 8, GLU 8, GLY 8, HIS 8, LYS 8, PHE 8, SER 8, TYR 8 (residue and the binding sites it lines).

Found with

  • AKG · 2-oxoglutaric acid
  • FE · Fe (III) ion
  • NI · Nickel (II) ion
  • SIN · Succinic acid

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