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Ligand · 5NU

5NU · 5-nitrouracil

5NU, 5-nitrouracil (C4 H3 N3 O4, 157.1 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
5NU
Formula
C4 H3 N3 O4
Class
ligand
Structures
6
PDB entries
3

Binding sites

5NU in 6 structures; the first of them:

  • 4HK6 · Crystal structure of Cordyceps militaris IDCase in complex with 5-nitro-uracil · 5NU A402 · binds HIS12, HIS14, LEU46, ARG68, ASN98, HIS195, LEU218, PHE222 and 5 more
  • 4WS4 · Crystal structure of Mycobacterium tuberculosis uracil-DNA glycosylase in complex with… · 5NU A303 · binds GLY66, GLN67, ASP68, PRO69, TYR70, SER80, PHE81, SER93 and 2 more
  • 4WS5 · Crystal structure of Mycobacterium tuberculosis uracil-DNA glycosylase in complex with… · 5NU A301 · binds GLY66, GLN67, ASP68, PRO69, TYR70, LEU79, SER80, PHE81 and 3 more
  • 4HK6 · Crystal structure of cordyceps militaris idcase in complex with 5- nitro-uracil · 5NU A402 · binds HIS12, HIS14, LEU46, ARG68, ASN98, HIS195, LEU218, PHE222 and 5 more
  • 4WS4 · Crystal structure of mycobacterium tuberculosis uracil-DNA glycosylase in complex with… · 5NU A303 · binds GLY66, GLN67, ASP68, PRO69, TYR70, SER80, PHE81, SER93 and 2 more
  • 4WS5 · Crystal structure of mycobacterium tuberculosis uracil-DNA glycosylase in complex with… · 5NU A301 · binds GLY66, GLN67, ASP68, PRO69, TYR70, LEU79, SER80, PHE81 and 3 more

Residues it binds most

HIS 12, PHE 12, LEU 10, ARG 8, ASN 12, ASP 12, SER 4, GLN 4, GLY 4, PRO 4 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • ZN · Zinc ion
  • CIT · Citric acid
  • DMS · Dimethyl sulfoxide
  • IPA · Isopropyl alcohol

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