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Ligand · 5HD

5HD · 5-(2-hydroxyethyl)nonane-1,9-diol

5HD, 5-(2-hydroxyethyl)nonane-1,9-diol (C11 H24 O3, 204.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
5HD
Formula
C11 H24 O3
Class
ligand
Structures
2
PDB entries
1

Binding sites

5HD in 2 structures; the first of them:

  • 3DWB · structure of human ECE-1 complexed with phosphoramidon · 5HD A816 · binds PHE445, PHE509, VAL519, PHE520, PHE537, PHE540, VAL544, GLN548 and 2 more
  • 3DWB · Structure of human ece-1 complexed with phosphoramidon · 5HD A816 · binds PHE445, PHE509, VAL519, PHE520, PHE537, PHE540, VAL544, GLN548 and 2 more

Residues it binds most

PHE 2, GLN 2, VAL 2, ASN 2 (residue and the binding sites it lines).

Found with

  • RDF · N-alpha-L-rhamnopyranosyloxy(hydroxyphosphinyl)-L-leucyl-L-tryptophan
  • ZN · Zinc ion

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