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Ligand · 53R

53R · 5-[(3R)-3-(5-methoxybiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine

53R, 5-[(3R)-3-(5-methoxybiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine (C22 H22 N4 O, 358.4 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å…

Component
53R
Formula
C22 H22 N4 O
Class
ligand
Structures
6
PDB entries
3

Binding sites

53R in 6 structures; the first of them:

  • 3EEJ · Candida glabrata Dihydrofolate Reductase complexed with… · 53R A229 · binds ILE9, VAL10, ALA11, GLY23, ASN24, LEU25, GLU32, MET33 and 10 more
  • 3F0B · Staphylococcus aureus dihydrofolate reductase complexed with NADPH and… · 53R X158 · binds LEU5, VAL6, ALA7, LEU20, ASP27, LEU28, VAL31, THR46 and 5 more
  • 3F0U · Staphylococcus aureus F98Y mutant dihydrofolate reductase complexed with NADPH and… · 53R X158 · binds LEU5, VAL6, ALA7, LEU20, ASP27, LEU28, VAL31, LYS32 and 10 more
  • 3EEJ · Candida glabrata dihydrofolate reductase complexed with 2,4-diamino-5… · 53R A229 · binds ILE9, VAL10, ALA11, GLY23, ASN24, LEU25, GLU32, MET33 and 10 more
  • 3F0B · Staphylococcus aureus dihydrofolate reductase complexed with NADPH and… · 53R X158 · binds LEU5, VAL6, ALA7, LEU20, ASP27, LEU28, VAL31, THR46 and 5 more
  • 3F0U · Staphylococcus aureus F98Y mutant dihydrofolate reductase complexed with NADPH and… · 53R X158 · binds LEU5, VAL6, ALA7, LEU20, ASP27, LEU28, VAL31, LYS32 and 10 more

Residues it binds most

LEU 8, ILE 8, THR 8, PHE 8, VAL 8, ALA 8, SER 8, MET 6, TYR 6, ASN 4 (residue and the binding sites it lines).

Found with

  • NDP · Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate

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