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Ligand · 4Y3

4Y3 · [[(2~{S},5~{R})-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3$l^{4}-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate

4Y3, [[(2~{S},5~{R})-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3$l^{4}-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate (C8 H15 F N3 O12 P3 S, 489.2 g/mol), in the MolNFT structures on GenesisL1…

Component
4Y3
Formula
C8 H15 F N3 O12 P3 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

4Y3 in 2 structures; the first of them:

  • 5C53 · Probing the Structural and Molecular Basis of Nucleotide Selectivity by Human… · 4Y3 A4003 · binds ARG853, ASP890, VAL891, ASP892, SER893, GLN894, GLU895, LYS925 and 9 more
  • 5C53 · Probing the structural and molecular basis of nucleotide selectivity by human… · 4Y3 A4003 · binds ARG853, ASP890, VAL891, ASP892, SER893, GLN894, GLU895, LYS925 and 9 more

Residues it binds most

ASP 2, ARG 2, LYS 2, TYR 2, DA 2, DG 2, GLN 2, GLU 2, HIS 2, ILE 2 (residue and the binding sites it lines).

Found with

  • DOC · 2',3'-dideoxycytidine-5'-monophosphate
  • MG · Magnesium ion

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