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Ligand · 4GW

4GW · 5-(5-formylthiophen-2-yl)uridine 5'-(trihydrogen diphosphate)

4GW, 5-(5-formylthiophen-2-yl)uridine 5'-(trihydrogen diphosphate) (C14 H16 N2 O13 P2 S, 514.3 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the…

Component
4GW
Formula
C14 H16 N2 O13 P2 S
Class
ligand
Structures
6
PDB entries
3

Binding sites

4GW in 6 structures; the first of them:

  • 3V0N · Crystal structure of the Fucosylgalactoside alpha N-acetylgalactosaminyltransferase (GTA… · 4GW A402 · binds PHE121, ALA122, ILE123, LYS124, TYR126, TRP181, VAL184, SER185 and 4 more
  • 3V0O · Crystal structure of the Fucosylgalactoside alpha N-acetylgalactosaminyltransferase (GTA… · 4GW A402 · binds PHE121, ALA122, ILE123, LYS124, TYR126, TRP181, VAL184, SER185 and 7 more
  • 3V0P · Crystal structure of the Fucosylgalactoside alpha N-acetylgalactosaminyltransferase (GTA… · 4GW A402 · binds PHE121, ALA122, ILE123, LYS124, TYR126, TRP181, VAL184, SER185 and 7 more
  • 3V0N · Crystal structure of the fucosylgalactoside alpha N- acetylgalactosaminyltransferase… · 4GW A402 · binds PHE121, ALA122, ILE123, LYS124, TYR126, TRP181, VAL184, SER185 and 4 more
  • 3V0O · Crystal structure of the fucosylgalactoside alpha N- acetylgalactosaminyltransferase… · 4GW A402 · binds PHE121, ALA122, ILE123, LYS124, TYR126, TRP181, VAL184, SER185 and 7 more
  • 3V0P · Crystal structure of the fucosylgalactoside alpha N- acetylgalactosaminyltransferase… · 4GW A402 · binds PHE121, ALA122, ILE123, LYS124, TYR126, TRP181, VAL184, SER185 and 7 more

Residues it binds most

VAL 12, ASP 12, LYS 12, ALA 12, ARG 12, ILE 12, PHE 12, TRP 12, TYR 12, SER 10 (residue and the binding sites it lines).

Found with

  • MN · Manganese (II) ion
  • SO4 · Sulfate ion
  • BHE · octyl 2-O-(6-deoxy-alpha-L-galactopyranosyl)-beta-D-galactopyranoside
  • 3GW · 5-(5-formylthiophen-2-yl)uridine-5'(2-(acetylamino)-2-deoxy-alpha-D-galactosyl)-diphosphate
  • GOL · Glycerol

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