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Ligand · 3YW

3YW · (2S)-2,3-dihydroxypropyl 2-acetamido-2-deoxy-alpha-D-glucopyranoside

3YW, (2S)-2,3-dihydroxypropyl 2-acetamido-2-deoxy-alpha-D-glucopyranoside (C11 H21 N O8, 295.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues…

Component
3YW
Formula
C11 H21 N O8
Class
sugar
Structures
2
PDB entries
1

Binding sites

3YW in 2 structures; the first of them:

  • 4X7R · Crystal structure of S. aureus TarM G117R mutant in complex with Fondaparinux… · 3YW A503 · binds GLY17, MET18, SER21, HIS249, VAL250, ASN251, LEU282, ASN304 and 9 more
  • 4X7R · Crystal structure of S. aureus tarm G117R mutant in complex with fondaparinux… · 3YW A503 · binds GLY17, MET18, SER21, HIS249, VAL250, ASN251, LEU282, ASN304 and 9 more

Residues it binds most

GLY 4, ASN 4, LEU 4, ARG 4, GLN 4, GLU 4, HIS 4, LYS 4, MET 4, SER 4 (residue and the binding sites it lines).

Found with

  • SUS · 2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose
  • UDP · Uridine-5'-diphosphate
  • ZDO · methyl 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranoside
  • BDP · beta-D-glucopyranuronic acid
  • IDS · 2-O-sulfo-alpha-L-idopyranuronic acid
  • SGN · 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose

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