GL1X · GenesisL1 explorer

Ligand · 3YI

3YI · (2S,12Z,14E,16S,17S,18R,19R,20R,21S,22R,23S,24E)-8-formyl-5,6,9,17,19-pentahydroxy-23-methoxy-2,4,12,16, 18,20,22-heptamethyl-1,11-dioxo-1,2-dihydro-2,7-(epoxypentadeca[1,11,13]trienoimino)naphtho[2,1-b]furan-21-yl acetate

3YI, (2S,12Z,14E,16S,17S,18R,19R,20R,21S,22R,23S,24E)-8-formyl-5,6,9,17,19-pentahydroxy-23-methoxy-2,4,12,16, 18,20,22-heptamethyl-1,11-dioxo-1,2-dihydro-2,7-(epoxypentadeca[1,11,13]trienoimino)naphtho[2,1-b]furan-21-yl acetate (C38 H47 N…

Component
3YI
Formula
C38 H47 N O13
Class
ligand
Structures
8
PDB entries
5

Binding sites

3YI in 8 structures; the first of them:

  • 6BEF · Crystal structure of VACV D13 in complex with 3-formyl rifamycin SV · 3YI A601 · binds GLN27, GLU165, PRO483, PHE486, PHE487, VAL24, PRO483, PHE486 and 4 more
  • 6ZOB · 3-Formylrifamycin SV binding to the access pocket of AcrB L protomer · 3YI A1208 · binds MET573, MET575, GLN577, PHE617, ALA618, PHE664, PHE666, LEU668 and 7 more
  • 6ZOC · Erythromycin binding to the access pocket of AcrB-G616P L protomer and 3-formylrifamycin… · 3YI B1107 · binds MET575, PHE617, ALA618, PHE664, PHE666, LEU668, PRO669, THR676 and 5 more
  • 6BEF · Crystal structure of vacv D13 in complex with 3-formyl rifamycin sv · 3YI A601 · binds GLN27, GLU165, PRO483, PHE486, PHE487, VAL24, PHE486, PHE168 and 1 more
  • 6ZO7 · 3-formylrifamycin sv binding to the access pocket of acrb-G619P L and T protomer · 3YI A1209 · binds MET575, GLN577, PHE617, ARG620, MET662, PHE664, PHE666, ARG717 and 5 more
  • 6ZOB · 3-formylrifamycin sv binding to the access pocket of acrb L protomer · 3YI A1208 · binds MET573, MET575, GLN577, PHE617, ALA618, PHE664, PHE666, LEU668 and 7 more
  • 6ZOC · Erythromycin binding to the access pocket of acrb-G616P L protomer and 3-formylrifamycin… · 3YI B1107 · binds MET575, PHE617, ALA618, PHE664, PHE666, LEU668, PRO669, THR676 and 5 more
  • 6ZOH · 3-formylrifamycin sv binding to the access pocket of acrb-G619P_G621P L and T protomers · 3YI A1210 · binds MET575, GLN577, PHE617, ARG620, MET662, PHE664, PHE666, ARG717 and 6 more

Residues it binds most

PHE 10, ARG 8, LEU 8, MET 8, PRO 10, GLY 8, ASN 8, GLN 6, ALA 4, VAL 4 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol
  • DDQ · Decylamine-N,N-dimethyl-N-oxide
  • GOL · Glycerol
  • HEX · Hexane
  • LMT · Dodecyl-beta-D-maltoside
  • D10 · Decane
  • D12 · Dodecane
  • PTY · Phosphatidylethanolamine
  • OCT · N-octane
  • DDR · (2S)-3-hydroxypropane-1,2-diyl didecanoate
  • CL · Chloride ion
  • SO4 · Sulfate ion

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.