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Ligand · 3QB

3QB · Lincomycin

3QB, Lincomycin (C18 H34 N2 O6 S, 406.5 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
3QB
Formula
C18 H34 N2 O6 S
Class
ligand
Structures
6
PDB entries
4

Binding sites

3QB in 6 structures; the first of them:

  • 4WH5 · Crystal structure of lincosamide antibiotic adenylyltransferase LnuA, lincomycin-bound · 3QB A204 · binds ASP28, GLY29, GLY30, ASP48, ASP50, HIS92, GLN104, PHE114 and 8 more
  • 5HKV · The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex… · 3QB X3001 · binds G2084, A2085, A2086, G2088, A2478, C2479, A2530, U2531 and 3 more
  • 8A5I · Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit. · 3QB A3156 · binds G2090, A2091, A2092, G2094, A2484, C2485, A2536, U2537 and 3 more
  • 8CGK · Lincomycin and Avilamycin bound to the 50S subunit · 3QB a3002 · binds G2057, A2058, A2059, G2061, A2451, C2452, 2MA2503, PSU2504 and 3 more
  • 4WH5 · Crystal structure of lincosamide antibiotic adenylyltransferase lnua, lincomycin-bound · 3QB A204 · binds ASP28, GLY29, GLY30, ASP48, ASP50, HIS92, GLN104, PHE114 and 8 more
  • 5HKV · The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex… · 3QB X3001 · binds G2084, A2085, A2086, G2088, A2478, C2479, A2530, U2531 and 3 more

Residues it binds most

A 4, ASP 4, G 4, PHE 4, C 4, U 4, GLN 4, HIS 4, ALA 4, GLY 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • SPD · Spermidine
  • CA · Calcium ion
  • K · Potassium ion
  • MN · Manganese (II) ion
  • ZN · Zinc ion
  • CL · Chloride ion
  • EOH · Ethanol
  • MPD · (4S)-2-methyl-2,4-pentanediol
  • 6UQ · (2R,3S,4R,6S)-4-hydroxy-6-{[(2R,3aR,4R,4'R,5'S,6S,6'R,7aR)-4'-hydroxy-6-{[(2S,3R,4R,5S,6R)-3-hydroxy-2-{[(2R,3S,4S,5S,6S)-4-hydroxy-6-({(2R,3aS,3a'R,6S,6'R,7R,7'R,7aR,7a'R)-7'-hydroxy-7'-[(1S)-1-hydroxyethyl]-6'-methyl-7-[(2-methylpropanoyl)oxy]octahydro-4H-2,4'-spirobi[[1,3]dioxolo[4,5-c]pyran]-6-yl}oxy)-5-methoxy-2-(methoxymethyl)tetrahydro-2H-pyran-3-yl]oxy}-5-methoxy-6-methyltetrahydro-2H-pyran-4-yl]oxy}-4,6',7a-trimethyloctahydro-4H-spiro[1,3-dioxolo[4,5-c]pyran-2,2'-pyran]-5'-yl]oxy}-2-met
  • PUT · 1,4-diaminobutane
  • ACT · Acetate ion

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