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Ligand · 3DY

3DY · 3,6-anhydro-beta-L-galactopyranose

3DY, 3,6-anhydro-beta-L-galactopyranose (C6 H10 O5, 162.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
3DY
Formula
C6 H10 O5
Class
sugar
Structures
2
PDB entries
1

Binding sites

3DY in 2 structures; the first of them:

  • 4U6D · Zg3615, a family 117 glycoside hydrolase in complex with beta-3,6-anhydro-L-galactose · 3DY A521 · binds ARG88, ASP89, TRP128, THR166, GLN181, PHE183, ASP192, HIS230 and 5 more
  • 4U6D · ZG3615, a family 117 glycoside hydrolase in complex with beta-3,6- anhydro-L-galactose · 3DY A521 · binds ARG88, ASP89, TRP128, THR166, GLN181, PHE183, ASP192, HIS230 and 5 more

Residues it binds most

ASP 2, HIS 2, ARG 2, GLN 2, GLU 2, LYS 2, PHE 2, THR 2, TRP 2 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • EDO · 1,2-ethanediol
  • PEG · Di(hydroxyethyl)ether

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