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Ligand · 3DU

3DU · 4-hydroxy-1-(5-O-phosphono-beta-D-ribofuranosyl)pyridin-2(1H)-one

3DU, 4-hydroxy-1-(5-O-phosphono-beta-D-ribofuranosyl)pyridin-2(1H)-one (C10 H14 N O9 P, 323.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues…

Component
3DU
Formula
C10 H14 N O9 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

3DU in 2 structures; the first of them:

  • 4NT0 · Crystal structure of orotidine 5'-monophosphate decarboxylase from Methanobacterium… · 3DU A301 · binds ALA18, ASP20, LYS42, ASP70, LYS72, GLU125, MET126, SER127 and 9 more
  • 4NT0 · Crystal structure of orotidine 5'-monophosphate decarboxylase from methanobacterium… · 3DU A301 · binds ALA18, ASP20, LYS42, ASP70, LYS72, GLU125, MET126, SER127 and 9 more

Residues it binds most

ASP 4, ILE 4, LYS 4, ALA 4, ARG 4, GLY 4, MET 4, PRO 4, SER 4, THR 4 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • PEG · Di(hydroxyethyl)ether

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