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Ligand · 2ZM

2ZM · 5-nitro-1H-benzimidazole

2ZM, 5-nitro-1H-benzimidazole (C7 H5 N3 O2, 163.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
2ZM
Formula
C7 H5 N3 O2
Class
ligand
Structures
4
PDB entries
2

Binding sites

2ZM in 4 structures; the first of them:

  • 4MSA · Crystal structure of PDE10A2 with fragment ZT0449 (5-nitro-1H-benzimidazole) · 2ZM A900 · binds TYR524, ASP674, LEU675, SER677, VAL678, ILE692, PHE696, MET713 and 2 more
  • 4N9C · Fragment-based Design of 3-Aminopyridine-derived Amides as Potent Inhibitors of Human… · 2ZM A601 · binds HIS191, PHE193, ASP219, SER241, VAL242, ALA244, SER275, ILE309 and 3 more
  • 4MSA · Crystal structure of PDE10A2 with fragment ZT0449 (5-nitro-1H- benzimidazole) · 2ZM A900 · binds TYR524, ASP674, LEU675, SER677, VAL678, ILE692, PHE696, MET713 and 2 more
  • 4N9C · Fragment-based design of 3-aminopyridine-derived amides as potent inhibitors of human… · 2ZM A601 · binds HIS191, PHE193, ASP219, SER241, VAL242, ALA244, SER275, ILE309 and 3 more

Residues it binds most

ILE 6, SER 6, PHE 6, TYR 8, ARG 6, ASP 6, VAL 6, ALA 4, HIS 4, CYS 2 (residue and the binding sites it lines).

Found with

  • NI · Nickel (II) ion
  • PO4 · Phosphate ion

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