GL1X · GenesisL1 explorer

Ligand · 2MD

2MD · Guanylate-O'-phosphoric acid mono-(2-amino-5,6-dimercapto-4-oxo-3,5,6,7,8A,9,10,10A-octahydro-4H-8-oxa-1,3,9,10-tetraaza-anthracen-7-ylmethyl) ester

2MD, Guanylate-O'-phosphoric acid mono-(2-amino-5,6-dimercapto-4-oxo-3,5,6,7,8A,9,10,10A-octahydro-4H-8-oxa-1,3,9,10-tetraaza-anthracen-7-ylmethyl) ester (C20 H28 N10 O13 P2 S2, 742.6 g/mol), in the MolNFT structures on GenesisL1: bound in…

Component
2MD
Formula
C20 H28 N10 O13 P2 S2
Class
ligand
Structures
6
PDB entries
3

Binding sites

2MD in 6 structures; the first of them:

  • 1H0H · Tungsten containing Formate Dehydrogenase from Desulfovibrio Gigas · 2MD A1001 · binds SER128, ALA130, GLN154, ILE157, SEC158, MET371, GLU409, TRP515 and 25 more
  • 1TMO · Trimethylamine N-oxide reductase from shewanella massilia · 2MD A799 · binds GLY117, TRP118, ARG119, ALA120, SER127, TYR148, SER149, ARG332 and 23 more
  • 2IV2 · Reinterpretation of reduced form of formate dehydrogenase H from E. coli · 2MD X801 · binds SER108, ARG110, GLY111, THR112, CYS136, ALA137, MET297, GLN301 and 24 more
  • 1H0H · Tungsten containing formate dehydrogenase from desulfovibrio gigas · 2MD A1001 · binds SER128, ALA130, GLN154, ILE157, SEC158, MET371, GLU409, TRP515 and 25 more
  • 1TMO · Trimethylamine N-oxide reductase from shewanella massilia · 2MD A799 · binds GLY117, TRP118, ARG119, ALA120, SER127, TYR148, SER149, ARG332 and 23 more
  • 2IV2 · Reinterpretation of reduced form of formate dehydrogenase H from E. COLI · 2MD X801 · binds SER108, ARG110, GLY111, THR112, CYS136, ALA137, MET297, GLN301 and 24 more

Residues it binds most

GLN 10, SER 10, THR 10, ASN 8, ASP 10, TRP 10, ARG 10, ALA 8, GLY 10, MET 8 (residue and the binding sites it lines).

Found with

  • MGD · 2-amino-5,6-dimercapto-7-methyl-3,7,8A,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide
  • SF4 · Iron/sulfur cluster
  • UNX · Unknown atom or ion
  • 2MO · Molybdenum (iv)oxide
  • CA · Calcium ion
  • MO · Molybdenum atom
  • W · Tungsten ion
  • EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.