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Ligand · 2DA

2DA · 2',3'-dideoxyadenosine-5'-monophosphate

2DA, 2',3'-dideoxyadenosine-5'-monophosphate (C10 H14 N5 O5 P, 315.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
2DA
Formula
C10 H14 N5 O5 P
Class
ligand
Structures
3
PDB entries
2

Binding sites

2DA in 3 structures; the first of them:

  • 6UU9 · E. coli mutant sigma-S transcription initiation complex with an 8-nt RNA ("Fresh" mutant… · 2DA DDD1505 · binds ARG425, ALA426, PRO427, ASN458, ASP460, ASP462, ASP464, THR786 and 6 more
  • 7AE9 · Crystal structure of mono-AMPylated HEPN(R46E) toxin in complex with MNT antitoxin · 2DA A201 · binds TYR109, ASP110, VAL7, ILE8, THR11, ARG12, LEU15, SER94 and 3 more
  • 7AE9 · Crystal structure of mono-ampylated HEPN(R46E) toxin in complex with mnt antitoxin · 2DA A201 · binds TYR109, ASP110, ILE8, THR11, ARG12, LEU15, SER94, LEU96 and 2 more

Residues it binds most

ILE 6, LEU 6, PHE 6, ARG 7, ASP 5, THR 6, TYR 6, SER 4, GLY 2, VAL 2 (residue and the binding sites it lines).

Found with

  • DPO · Diphosphate
  • MG · Magnesium ion
  • ZN · Zinc ion

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